Proteomics research on forest trees, the most recalcitrant and orphan plant species.
Identifieur interne : 002D45 ( Main/Exploration ); précédent : 002D44; suivant : 002D46Proteomics research on forest trees, the most recalcitrant and orphan plant species.
Auteurs : Nieves Abril [Espagne] ; Jean-Marc Gion ; René Kerner ; Gerhard Müller-Starck ; Rafael M Navarro Cerrillo ; Christophe Plomion ; Jenny Renaut ; Luis Valledor ; Jesús V. Jorrin-NovoSource :
- Phytochemistry [ 1873-3700 ] ; 2011.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Arbres, Protéines végétales.
- Génomique, Protéomique, Spécificité d'espèce.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Plant Proteins.
- genetics : Trees.
- Genomics, Proteomics, Species Specificity.
Abstract
The contribution of proteomics to the knowledge of forest tree (the most recalcitrant and almost forgotten plant species) biology is being reviewed and discussed, based on the author's own research work and papers published up to November 2010. This review is organized in four introductory sections starting with the definition of forest trees (1), the description of the environmental and economic importance (2) and its derived current priorities and research lines for breeding and conservation (3) including forest tree genomics (4). These precede the main body of this review: a general overview to proteomics (5) for introducing the forest tree proteomics section (6). Proteomics, defined as scientific discipline or experimental approach, it will be discussed both from a conceptual and methodological point of view, commenting on realities, challenges and limitations. Proteomics research in woody plants is limited to a reduced number of genera, including Pinus, Picea, Populus, Eucalyptus, and Fagus, mainly using first-generation approaches, e.g., those based on two-dimensional electrophoresis coupled to mass spectrometry. This area joins the own limitations of the technique and the difficulty and recalcitrance of the plant species as an experimental system. Furthermore, it contributes to a deeper knowledge of some biological processes, namely growth, development, organogenesis, and responses to stresses, as it is also used in the characterization and cataloguing of natural populations and biodiversity (proteotyping) and in assisting breeding programmes.
DOI: 10.1016/j.phytochem.2011.01.005
PubMed: 21353265
Affiliations:
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Severo Ochoa, Cordoba, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Dpt. of Biochemistry and Molecular Biology, ETSIAM, University of Cordoba, Campus de Rabanales, Ed. Severo Ochoa, Cordoba</wicri:regionArea><wicri:noRegion>Cordoba</wicri:noRegion></affiliation></author><author><name sortKey="Gion, Jean Marc" sort="Gion, Jean Marc" uniqKey="Gion J" first="Jean-Marc" last="Gion">Jean-Marc Gion</name></author><author><name sortKey="Kerner, Rene" sort="Kerner, Rene" uniqKey="Kerner R" first="René" last="Kerner">René Kerner</name></author><author><name sortKey="Muller Starck, Gerhard" sort="Muller Starck, Gerhard" uniqKey="Muller Starck G" first="Gerhard" last="Müller-Starck">Gerhard Müller-Starck</name></author><author><name sortKey="Cerrillo, Rafael M Navarro" sort="Cerrillo, Rafael M Navarro" uniqKey="Cerrillo R" first="Rafael M Navarro" last="Cerrillo">Rafael M Navarro Cerrillo</name></author><author><name sortKey="Plomion, Christophe" sort="Plomion, Christophe" uniqKey="Plomion C" first="Christophe" last="Plomion">Christophe Plomion</name></author><author><name sortKey="Renaut, Jenny" sort="Renaut, Jenny" uniqKey="Renaut J" first="Jenny" last="Renaut">Jenny Renaut</name></author><author><name sortKey="Valledor, Luis" sort="Valledor, Luis" uniqKey="Valledor L" first="Luis" last="Valledor">Luis Valledor</name></author><author><name sortKey="Jorrin Novo, Jesus V" sort="Jorrin Novo, Jesus V" uniqKey="Jorrin Novo J" first="Jesús V" last="Jorrin-Novo">Jesús V. Jorrin-Novo</name></author></analytic><series><title level="j">Phytochemistry</title><idno type="eISSN">1873-3700</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Genomics (MeSH)</term><term>Plant Proteins (genetics)</term><term>Proteomics (MeSH)</term><term>Species Specificity (MeSH)</term><term>Trees (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Arbres (génétique)</term><term>Génomique (MeSH)</term><term>Protéines végétales (génétique)</term><term>Protéomique (MeSH)</term><term>Spécificité d'espèce (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Trees</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arbres</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genomics</term><term>Proteomics</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Génomique</term><term>Protéomique</term><term>Spécificité d'espèce</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The contribution of proteomics to the knowledge of forest tree (the most recalcitrant and almost forgotten plant species) biology is being reviewed and discussed, based on the author's own research work and papers published up to November 2010. This review is organized in four introductory sections starting with the definition of forest trees (1), the description of the environmental and economic importance (2) and its derived current priorities and research lines for breeding and conservation (3) including forest tree genomics (4). These precede the main body of this review: a general overview to proteomics (5) for introducing the forest tree proteomics section (6). Proteomics, defined as scientific discipline or experimental approach, it will be discussed both from a conceptual and methodological point of view, commenting on realities, challenges and limitations. Proteomics research in woody plants is limited to a reduced number of genera, including Pinus, Picea, Populus, Eucalyptus, and Fagus, mainly using first-generation approaches, e.g., those based on two-dimensional electrophoresis coupled to mass spectrometry. This area joins the own limitations of the technique and the difficulty and recalcitrance of the plant species as an experimental system. Furthermore, it contributes to a deeper knowledge of some biological processes, namely growth, development, organogenesis, and responses to stresses, as it is also used in the characterization and cataloguing of natural populations and biodiversity (proteotyping) and in assisting breeding programmes.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21353265</PMID><DateCompleted><Year>2011</Year><Month>09</Month><Day>27</Day></DateCompleted><DateRevised><Year>2011</Year><Month>06</Month><Day>07</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-3700</ISSN><JournalIssue CitedMedium="Internet"><Volume>72</Volume><Issue>10</Issue><PubDate><Year>2011</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Phytochemistry</Title><ISOAbbreviation>Phytochemistry</ISOAbbreviation></Journal><ArticleTitle>Proteomics research on forest trees, the most recalcitrant and orphan plant species.</ArticleTitle><Pagination><MedlinePgn>1219-42</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.phytochem.2011.01.005</ELocationID><Abstract><AbstractText>The contribution of proteomics to the knowledge of forest tree (the most recalcitrant and almost forgotten plant species) biology is being reviewed and discussed, based on the author's own research work and papers published up to November 2010. This review is organized in four introductory sections starting with the definition of forest trees (1), the description of the environmental and economic importance (2) and its derived current priorities and research lines for breeding and conservation (3) including forest tree genomics (4). These precede the main body of this review: a general overview to proteomics (5) for introducing the forest tree proteomics section (6). Proteomics, defined as scientific discipline or experimental approach, it will be discussed both from a conceptual and methodological point of view, commenting on realities, challenges and limitations. Proteomics research in woody plants is limited to a reduced number of genera, including Pinus, Picea, Populus, Eucalyptus, and Fagus, mainly using first-generation approaches, e.g., those based on two-dimensional electrophoresis coupled to mass spectrometry. This area joins the own limitations of the technique and the difficulty and recalcitrance of the plant species as an experimental system. Furthermore, it contributes to a deeper knowledge of some biological processes, namely growth, development, organogenesis, and responses to stresses, as it is also used in the characterization and cataloguing of natural populations and biodiversity (proteotyping) and in assisting breeding programmes.</AbstractText><CopyrightInformation>Copyright © 2011 Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Abril</LastName><ForeName>Nieves</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Dpt. of Biochemistry and Molecular Biology, ETSIAM, University of Cordoba, Campus de Rabanales, Ed. Severo Ochoa, Cordoba, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gion</LastName><ForeName>Jean-Marc</ForeName><Initials>JM</Initials></Author><Author ValidYN="Y"><LastName>Kerner</LastName><ForeName>René</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Müller-Starck</LastName><ForeName>Gerhard</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Cerrillo</LastName><ForeName>Rafael M Navarro</ForeName><Initials>RM</Initials></Author><Author ValidYN="Y"><LastName>Plomion</LastName><ForeName>Christophe</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Renaut</LastName><ForeName>Jenny</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Valledor</LastName><ForeName>Luis</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Jorrin-Novo</LastName><ForeName>Jesús V</ForeName><Initials>JV</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>02</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Phytochemistry</MedlineTA><NlmUniqueID>0151434</NlmUniqueID><ISSNLinking>0031-9422</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="N">Genomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040901" MajorTopicYN="Y">Proteomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2010</Year><Month>09</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2010</Year><Month>12</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2011</Year><Month>01</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2011</Year><Month>3</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>3</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>9</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">21353265</ArticleId><ArticleId IdType="pii">S0031-9422(11)00031-8</ArticleId><ArticleId IdType="doi">10.1016/j.phytochem.2011.01.005</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Espagne</li></country></list><tree><noCountry><name sortKey="Cerrillo, Rafael M Navarro" sort="Cerrillo, Rafael M Navarro" uniqKey="Cerrillo R" first="Rafael M Navarro" last="Cerrillo">Rafael M Navarro Cerrillo</name><name sortKey="Gion, Jean Marc" sort="Gion, Jean Marc" uniqKey="Gion J" first="Jean-Marc" last="Gion">Jean-Marc Gion</name><name sortKey="Jorrin Novo, Jesus V" sort="Jorrin Novo, Jesus V" uniqKey="Jorrin Novo J" first="Jesús V" last="Jorrin-Novo">Jesús V. Jorrin-Novo</name><name sortKey="Kerner, Rene" sort="Kerner, Rene" uniqKey="Kerner R" first="René" last="Kerner">René Kerner</name><name sortKey="Muller Starck, Gerhard" sort="Muller Starck, Gerhard" uniqKey="Muller Starck G" first="Gerhard" last="Müller-Starck">Gerhard Müller-Starck</name><name sortKey="Plomion, Christophe" sort="Plomion, Christophe" uniqKey="Plomion C" first="Christophe" last="Plomion">Christophe Plomion</name><name sortKey="Renaut, Jenny" sort="Renaut, Jenny" uniqKey="Renaut J" first="Jenny" last="Renaut">Jenny Renaut</name><name sortKey="Valledor, Luis" sort="Valledor, Luis" uniqKey="Valledor L" first="Luis" last="Valledor">Luis Valledor</name></noCountry><country name="Espagne"><noRegion><name sortKey="Abril, Nieves" sort="Abril, Nieves" uniqKey="Abril N" first="Nieves" last="Abril">Nieves Abril</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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